Information for motif1


Reverse Opposite:

p-value:1e-19
log p-value:-4.567e+01
Information Content per bp:1.839
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif31.15%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif2.73%
Average Position of motif in Targets27.7 +/- 12.8bp
Average Position of motif in Background22.9 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGKYGCCGCG--
NNNNTTGGCGCCGANNN

MA0509.1_Rfx1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGKYGCCGCG-----
-GTTGCCATGGNAAC

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGKYGCCGCG
AGCGCGCC---

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGKYGCCGCG-----
NNNCNGTTGCCATGGNAAC

MA0510.1_RFX5/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGKYGCCGCG---
NCTGTTGCCAGGGAG

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGKYGCCGCG--
NNNNTTGGCGCCGANNN

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGKYGCCGCG----
NGTTGCCATGGCAA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGKYGCCGCG-
CTGTTGCTAGGS

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGKYGCCGCG---
NCCGTTGCTANGNGN

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGKYGCCGCG---
NNCGTTGCTATGGNN