Information for motif2


Reverse Opposite:

p-value:1e-18
log p-value:-4.225e+01
Information Content per bp:1.491
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif29.51%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif2.29%
Average Position of motif in Targets22.6 +/- 8.6bp
Average Position of motif in Background20.2 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:1
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GCAGGSAGVGRGACAKHCCR
---AGGTGNCAGACAG----

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCAGGSAGVGRGACAKHCCR
TCAGNGAGCGTGAC------

MA0599.1_KLF5/Jaspar

Match Rank:3
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:GCAGGSAGVGRGACAKHCCR
--GGGGNGGGGC--------

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.47
Offset:3
Orientation:forward strand
Alignment:GCAGGSAGVGRGACAKHCCR
---AGGTGHCAGACA-----

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.44
Offset:1
Orientation:forward strand
Alignment:GCAGGSAGVGRGACAKHCCR
-TGCGGAGTGGGACTGG---

MA0079.3_SP1/Jaspar

Match Rank:6
Score:0.43
Offset:1
Orientation:reverse strand
Alignment:GCAGGSAGVGRGACAKHCCR
-GGGGGCGGGGC--------

MA0471.1_E2F6/Jaspar

Match Rank:7
Score:0.43
Offset:3
Orientation:forward strand
Alignment:GCAGGSAGVGRGACAKHCCR
---GGGCGGGAAGG------

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.42
Offset:3
Orientation:forward strand
Alignment:GCAGGSAGVGRGACAKHCCR
---GGGGGGGG---------

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.42
Offset:10
Orientation:reverse strand
Alignment:GCAGGSAGVGRGACAKHCCR--
----------GGACCACCCACG

MA0039.2_Klf4/Jaspar

Match Rank:10
Score:0.41
Offset:2
Orientation:forward strand
Alignment:GCAGGSAGVGRGACAKHCCR
--TGGGTGGGGC--------