Information for motif13


Reverse Opposite:

p-value:1e-17
log p-value:-4.089e+01
Information Content per bp:1.920
Number of Target Sequences with motif206.0
Percentage of Target Sequences with motif9.15%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif4.79%
Average Position of motif in Targets26.1 +/- 10.0bp
Average Position of motif in Background25.1 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGATTCAGAAAACTGAAGA
GACCACATTCATACAAT------

MA0496.1_MAFK/Jaspar

Match Rank:2
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA
CTGAGTCAGCAATTT-----

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA
-ACATTCATGACACG-----

PB0162.1_Sfpi1_2/Jaspar

Match Rank:4
Score:0.47
Offset:0
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA
CAAATTCCGGAACC------

MA0495.1_MAFF/Jaspar

Match Rank:5
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-CAGATTCAGAAAACTGAAGA
GCTGAGTCAGCAATTTTT---

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-CAGATTCAGAAAACTGAAGA
GCTGASTCAGCA---------

CHR/Cell-Cycle-Exp/Homer

Match Rank:7
Score:0.46
Offset:0
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA
CGGTTTCAAA----------

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:8
Score:0.46
Offset:9
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA-
---------GAAAGTGAAAGT

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.45
Offset:1
Orientation:forward strand
Alignment:CAGATTCAGAAAACTGAAGA
-AGAGCCATAAAATTCG---

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:10
Score:0.45
Offset:9
Orientation:reverse strand
Alignment:CAGATTCAGAAAACTGAAGA-
---------GAAACTGAAACT