Information for motif19


Reverse Opposite:

p-value:1e0
log p-value:-1.534e+00
Information Content per bp:1.530
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets23.7 +/- 12.2bp
Average Position of motif in Background24.6 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGAAATTTAC
GGGAATTTCC

MA0156.1_FEV/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGAAATTTAC
CAGGAAAT----

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGAAATTTAC
NACAGGAAAT----

MA0136.1_ELF5/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATTTAC
AAGGAAGTA---

MA0107.1_RELA/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAAATTTAC
GGAAATTCCC

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGAAATTTAC
AATGGAAAAT---

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGAAATTTAC
NACAGGAAAT----

PB0012.1_Elf3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GGAAATTTAC
AACAAGGAAGTAA--

MA0152.1_NFATC2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTTAC
TGGAAAA----

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGAAATTTAC
AVCAGGAAGT----