Information for motif5


Reverse Opposite:

p-value:1e-88
log p-value:-2.049e+02
Information Content per bp:1.674
Number of Target Sequences with motif362.0
Percentage of Target Sequences with motif16.07%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif5.12%
Average Position of motif in Targets24.9 +/- 13.3bp
Average Position of motif in Background34.1 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATGC-----
SCAGYCADGCATGAC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCAGGCATGC--
-AAGGCAAGTGT

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAGGCATGC
CCWGGAATGY

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAGGCATGC
--AGGCCTNG

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAGGCATGC------
GCAGCCAAGCGTGACN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATGC
CCAGACRSVB

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATGC
BCAGACWA--

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAGGCATGC
NCTGGAATGC

MA0090.1_TEAD1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCATGC-
CNGAGGAATGTG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCATGC
TBGCACGCAA--