Information for motif9


Reverse Opposite:

p-value:1e-35
log p-value:-8.286e+01
Information Content per bp:1.530
Number of Target Sequences with motif575.0
Percentage of Target Sequences with motif25.53%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif15.77%
Average Position of motif in Targets25.2 +/- 9.5bp
Average Position of motif in Background30.3 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG-----
----------TGCCCTGGGGCNANN

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:2
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG----
---------NTNGCCTCAGGCNNN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG--
----------TCCCCTGGGGAC

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:4
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG----
---------NTCGCCTCAGGCAAT

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:5
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG----
---------NTCCCCTCAGGGANT

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG
-NNGCNCTGCGCGGC-----

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG
----CTGTTCCTGG------

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.48
Offset:8
Orientation:forward strand
Alignment:TTCGCTGTGCTCGCCTGGGG
--------CCTCACCTG---

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.48
Offset:9
Orientation:reverse strand
Alignment:TTCGCTGTGCTCGCCTGGGG-
---------WTGSCCTSAGGS

MA0154.2_EBF1/Jaspar

Match Rank:10
Score:0.48
Offset:9
Orientation:forward strand
Alignment:TTCGCTGTGCTCGCCTGGGG
---------GTCCCCAGGGA