Information for motif12


Reverse Opposite:

p-value:1e-60
log p-value:-1.397e+02
Information Content per bp:1.592
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif6.13%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif1.49%
Average Position of motif in Targets24.2 +/- 9.5bp
Average Position of motif in Background28.3 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GAACAGAGGTYGCTGCATTT
----AGATGCTRCTRCCHT-

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GAACAGAGGTYGCTGCATTT--
-----AATCGCACTGCATTCCG

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-GAACAGAGGTYGCTGCATTT
AAAACAAAGG-----------

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GAACAGAGGTYGCTGCATTT
-AACAAAGG-----------

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:5
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GAACAGAGGTYGCTGCATTT
-AACAGATGGTCN-------

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--GAACAGAGGTYGCTGCATTT
AAGGCCAGATGGTCCGG-----

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----GAACAGAGGTYGCTGCATTT
CCAGGAACAG--------------

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----GAACAGAGGTYGCTGCATTT
ATAAGAACAAAGGACTA-------

PB0162.1_Sfpi1_2/Jaspar

Match Rank:9
Score:0.46
Offset:7
Orientation:reverse strand
Alignment:GAACAGAGGTYGCTGCATTT-
-------GGTTCCNNAATTTG

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----GAACAGAGGTYGCTGCATTT
AGAAGAACAAAGGACTA-------