Information for motif13


Reverse Opposite:

p-value:1e-59
log p-value:-1.381e+02
Information Content per bp:1.952
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif4.53%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets25.7 +/- 12.4bp
Average Position of motif in Background11.3 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0025.1_NFIL3/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTTTATGAAA---
--TTATGTAACAT

MA0040.1_Foxq1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GTTTATGAAA
TATTGTTTATT---

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTTTATGAAA-
--TTATGCAAT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATGAAA
NTTTTATGAC-

PB0001.1_Arid3a_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTTTATGAAA----
GGGTTTAATTAAAATTC

MA0102.3_CEBPA/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTTTATGAAA-
NATTGTGCAAT

MA0151.1_ARID3A/Jaspar

Match Rank:7
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GTTTATGAAA
----ATTAAA

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTATGAAA
TTTTATTRGN

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTTATGAAA---
NAATTTTACGAGNTNN

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTTATGAAA---
ANATTTTTGCAANTN