Information for motif18


Reverse Opposite:

p-value:1e-37
log p-value:-8.553e+01
Information Content per bp:1.676
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets25.1 +/- 12.8bp
Average Position of motif in Background26.5 +/- 2.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGGTACCTTT----
NNNGTGACCTTTGNNN

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGGTACCTTT-
GCTGGGGGGTACCCCTT

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGGTACCTTT----
--TGACCTTTNCNT

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGGTACCTTT----
NNGCACCTTTCTCC

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGGTACCTTT----
NNNNTGACCTTTNNNN

MA0109.1_Hltf/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGGTACCTTT---
---AACCTTATAT

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GGGTACCTTT---
-----CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGGTACCTTT---
-----CCWTTGTY

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGGTACCTTT-----
-----CCTTTGTTTT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGGTACCTTT-----
-----CCTTTGATGT