Information for motif20


Reverse Opposite:

p-value:1e-33
log p-value:-7.783e+01
Information Content per bp:1.530
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets25.9 +/- 12.6bp
Average Position of motif in Background31.8 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGTATTCAGA
CGGTTTCAAA

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGTATTCAGA-----
-ACATTCATGACACG

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGTATTCAGA
CCWGGAATGY---

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GGTATTCAGA-
TNNTTTCGTATTNNANN

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGTATTCAGA----
GACCACATTCATACAAT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGTATTCAGA-
CCATTGTATGCAAAT

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGTATTCAGA-
NDGTAAACARRN

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTATTCAGA
-GTAAACAG-

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTATTCAGA-----
TTGTATGCAAATTAGA

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTATTCAGA---
-GTAATCDGATTA