Information for motif26


Reverse Opposite:

p-value:1e-22
log p-value:-5.275e+01
Information Content per bp:1.664
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets24.4 +/- 11.5bp
Average Position of motif in Background24.1 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGTAGTG---
NTNNTTAAGTGGNTNAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGTAGTG---
NTNNTTAAGTGGTTANN

MA0124.1_NKX3-1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTAAGTAGTG
-TAAGTAT--

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTAAGTAGTG---
GNCTTAATTAGTGNNN

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTAAGTAGTG----
NATTTAAGTACTTANNA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTAAGTAGTG
TTAAGTGCTT

PH0135.1_Phox2a/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TTAAGTAGTG-
CAGCATTAATTAGTAG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTAAGTAGTG
CTYRAGTGSY-

PH0112.1_Nkx2-3/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTAAGTAGTG----
CTTTAAGTACTTAATG

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGTAGTG---
GANGTTAACTAGTTTNN