Information for motif27


Reverse Opposite:

p-value:1e-22
log p-value:-5.108e+01
Information Content per bp:1.668
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets27.3 +/- 13.5bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GGGATGATAT---
TAGAGGGATTAAATTTC

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGGATGATAT---
NANAGGGATTAATTATN

PH0122.1_Obox2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGGATGATAT--
TGAGGGGGATTAACTAT

MA0596.1_SREBF2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGGATGATAT
ATGGGGTGAT--

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGATGATAT------
TNNNATGATTTCNNCNN

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGATGATAT--
TTAAGGGGATTAACTAC

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGGATGATAT--------
NDBAGATRWTATCTVNNNNN

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GGGATGATAT--
TGAGGGGGATTAACTAT

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGGATGATAT---
AGGGGGATTAGCTGCC

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGGATGATAT---
AGAGGGGATTAATTTAT