Information for motif28


Reverse Opposite:

p-value:1e-6
log p-value:-1.508e+01
Information Content per bp:1.714
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets24.3 +/- 9.1bp
Average Position of motif in Background28.5 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAGCAAAAA
GTTAAAAAAAAAAATTA----

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAGCAAAAA
AACAAACAACAAGAG------

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAAAAAAAGCAAAAA
TACTGGAAAAAAAA-----------

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAAAAAAAAAAAAGCAAAAA
-AAATAAGAAAAAAC-----

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAAAAAAAAAAAAGCAAAAA
GTTCAAAAAAAAAATTC-------

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAAAAAAAAAAAAGCAAAAA
AGCCGAAAAAAAAAT---------

FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAGCAAAAA
AGTAAACAAAAAAGAACANN

MA0481.1_FOXP1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAGCAAAAA
CAAAAGTAAACAAAG------

MA0041.1_Foxd3/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AAAAAAAAAAAAAGCAAAAA
---AAACAAACATTC-----

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAGCAAAAA
AAAAATAACAAACGG-----