Information for motif3


Reverse Opposite:

p-value:1e-190
log p-value:-4.391e+02
Information Content per bp:1.787
Number of Target Sequences with motif314.0
Percentage of Target Sequences with motif13.94%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif1.93%
Average Position of motif in Targets25.1 +/- 12.1bp
Average Position of motif in Background38.3 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGAGCCTGG
--CAGCC---

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGAGCCTGG
CGGAGC----

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGCCTGG-
-ACATCCTGNT

MA0146.2_Zfx/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGCCTGG
GGGGCCGAGGCCTG-

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCCTGG
ACCACATCCTGT

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGCCTGG
GGCCACACCCAN-

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CAGAGCCTGG
ATGCCAGACN----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CAGAGCCTGG
--TWGTCTGV

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CAGAGCCTGG
--AGGCCTAG

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CAGAGCCTGG
CNAGGCCT--