Information for motif4


Reverse Opposite:

p-value:1e-143
log p-value:-3.299e+02
Information Content per bp:1.530
Number of Target Sequences with motif177.0
Percentage of Target Sequences with motif7.86%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets24.8 +/- 12.7bp
Average Position of motif in Background22.8 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGCCCTT
TGACCTTGACCT-

MA0141.2_Esrrb/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTTGCCCTT-----
---TGACCTTGANNN

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTGCCCTT--
--NTGACCTTGA

MA0597.1_THAP1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCTTGCCCTT-
--CTGCCCGCA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGCCCTT
NNACTTGCCTT-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCTTGCCCTT---
---TGACCTTGAV

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTTGCCCTT
--GTGACCTT

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCTTGCCCTT---
---TGACCTTGAN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCTTGCCCTT-----
NNNNTGACCTTTNNNN

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGCCCTT
GCTGACCTTGAACTN