Information for motif5


Reverse Opposite:

p-value:1e-133
log p-value:-3.075e+02
Information Content per bp:1.530
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif7.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets25.2 +/- 13.2bp
Average Position of motif in Background26.3 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGAGGCACA-------
-CGAAGCACACAAAATA

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGAGGCACA-------
-AGCGGCACACACGCAA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGAGGCACA-
-CCAGGAACAG

MA0081.1_SPIB/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGGCACA
-AGAGGAA--

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGCACA
AGCAACAGCCGCACC

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGAGGCACA---
---AAGCACATGG

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGCACA
ATTGCCTCAGGCAAT

MA0007.2_AR/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGAGGCACA--------
---AAGAACAGAATGTTC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGGCACA
CCAGACRSVB-

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGCACA
ATTGCCTGAGGCAAT