Information for motif15


Reverse Opposite:

p-value:1e-10
log p-value:-2.520e+01
Information Content per bp:1.655
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif7.89%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets25.9 +/- 12.9bp
Average Position of motif in Background27.2 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TYYCACTGTG
-CTCATTGTC

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TYYCACTGTG----
TGTTCCCATTGTGTACT

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TYYCACTGTG
---CTTTGT-

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TYYCACTGTG----
NNNCCATTGTGTNAN

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TYYCACTGTG-----
CAATCACTGGCAGAAT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TYYCACTGTG
--CCWTTGTY

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TYYCACTGTG
--CCTTTGTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TYYCACTGTG-
-NCCATTGTTC

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TYYCACTGTG--
--CCATTGTTTT

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TYYCACTGTG----
ANNTCCATTGTTCNNN