Information for motif2


Reverse Opposite:

p-value:1e-42
log p-value:-9.725e+01
Information Content per bp:1.511
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif15.04%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets23.2 +/- 11.9bp
Average Position of motif in Background37.5 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTKTCCCTGR
CTGTTCCTGG

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTKTCCCTGR-
-TGACCTTGAV

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTKTCCCTGR-
-TGACCTTGAN

MA0505.1_Nr5a2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTKTCCCTGR----
GCTGACCTTGAACTN

MA0592.1_ESRRA/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTKTCCCTGR
NGTGACCTTGG

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTKTCCCTGR
CTGACCTTTG

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTKTCCCTGR---
-TGACCTTGANNN

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTKTCCCTGR-
ACTTTCACTTTC

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTKTCCCTGR
NTGACCTTGA

MA0524.1_TFAP2C/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTKTCCCTGR-------
--TGCCCTGGGGCNANN