Information for motif3


Reverse Opposite:

p-value:1e-40
log p-value:-9.385e+01
Information Content per bp:1.587
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif14.66%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets25.7 +/- 12.8bp
Average Position of motif in Background26.7 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACAASTCTAT
NNCNNAACAATTNT--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ACAASTCTAT
RNAACAATGG---

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------ACAASTCTAT-
TNCNNAACAATTTTTNC

MA0133.1_BRCA1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACAASTCTAT
ACAACAC---

MA0084.1_SRY/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----ACAASTCTAT
GTAAACAAT-----

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----ACAASTCTAT
NNNTAACAATTATAN

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-ACAASTCTAT
AACAAT-----

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----ACAASTCTAT--
AAAGACCTGTCAATAC

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----ACAASTCTAT--
AAAGACCTGTCAATCC

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------ACAASTCTAT-
ANTNNTACATGTANNTN