Information for motif7


Reverse Opposite:

p-value:1e-23
log p-value:-5.400e+01
Information Content per bp:1.597
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif16.54%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif2.85%
Average Position of motif in Targets27.7 +/- 11.3bp
Average Position of motif in Background32.4 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAGGCCTTGA
-AGGCCTNG-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAGGCCTTGA-
-TGACCTTGAN

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGGCCTTGA
-AGGCCTAG-

MA0505.1_Nr5a2/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCCTTGA----
GCTGACCTTGAACTN

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGGCCTTGA-
-TGACCTTGAV

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGGCCTTGA----
CAGGCCNNGGCCNN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGGCCTTGA---
-TGACCTTGACCT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CAGGCCTTGA---
---CCTTTGATGT

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGGCCTTGA---
-TGACCTTGANNN

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCCTTGA---
NNNNATGACCTTGANTN