Information for motif1


Reverse Opposite:

p-value:1e-554
log p-value:-1.278e+03
Information Content per bp:1.640
Number of Target Sequences with motif486.0
Percentage of Target Sequences with motif19.44%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets25.8 +/- 12.3bp
Average Position of motif in Background33.6 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GRCATGTCYK---
AATATACATGTAAAATT

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GRCATGTCYK--------
NGGGCATGTCTGGGCATGTT

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GRCATGTCYK--------
NGGGCATGTCTGGGCATGTT

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GRCATGTCYK--
NNTTTTACATGTANNNT

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GRCATGTCYK----------
NGCATGTCNNGACATGCNNN

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GRCATGTCYK---
AAAATACATGTAATACT

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GRCATGTCYK-----
-ACATGCCCGGGCAT

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GRCATGTCYK--
ANTNTTACATGTATNTA

MA0525.1_TP63/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GRCATGTCYK---------
NGGCATGTCTGGGCATGTNN

PH0084.1_Irx3_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GRCATGTCYK---
AATATACATGTAATATA