Information for motif2


Reverse Opposite:

p-value:1e-344
log p-value:-7.943e+02
Information Content per bp:1.703
Number of Target Sequences with motif432.0
Percentage of Target Sequences with motif17.28%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets26.0 +/- 9.3bp
Average Position of motif in Background25.9 +/- 4.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
AACATGCCCAGACATGCCCN

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
AACATGCCCAGACATGCCCN

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:KGCATGCCCGGGCATGCMCA
NGCATGTCNNGACATGCNNN

MA0525.1_TP63/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-KGCATGCCCGGGCATGCMCA
AGACATGCCCAGACATGCCC-

MA0106.2_TP53/Jaspar

Match Rank:5
Score:0.78
Offset:1
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
-ACATGCCCAGACATG----

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
-ACATGCCCGGGCAT-----

NRF1/Promoter/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
-------GTGCGCATGCGC-

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:KGCATGCCCGGGCATGCMCA-
---------GCGCATGCGCAG

MA0506.1_NRF1/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:forward strand
Alignment:KGCATGCCCGGGCATGCMCA
---------GCGCCTGCGCA

TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:KGCATGCCCGGGCATGCMCA
----TGWCCTCARNTGACC-