Information for motif20


Reverse Opposite:

p-value:1e-25
log p-value:-5.767e+01
Information Content per bp:1.376
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif2.29%
Average Position of motif in Targets23.6 +/- 10.0bp
Average Position of motif in Background25.3 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0499.1_Myod1/Jaspar

Match Rank:1
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
--NGNGACAGCTGCN-----

MA0500.1_Myog/Jaspar

Match Rank:2
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCTNBGACAGCTGATTTGGA
-----GACAGCTGCAG----

MA0521.1_Tcf12/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCTNBGACAGCTGATTTGGA
-----AACAGCTGCAG----

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCTNBGACAGCTGATTTGGA
-----AACAGCTG-------

PH0170.1_Tgif2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
GTATTGACAGCTNNTT----

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
------HCAGCTGDTN----

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
GTATTGACAGGTNNTT----

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
NTATTGACAGCTNNTT----

MA0060.2_NFYA/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCTNBGACAGCTGATTTGGA--
----AGAGTGCTGATTGGTCCA

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GCTNBGACAGCTGATTTGGA
GGATTGACAGGTCNTT----