Information for motif21


Reverse Opposite:

p-value:1e-21
log p-value:-5.047e+01
Information Content per bp:1.530
Number of Target Sequences with motif135.0
Percentage of Target Sequences with motif5.40%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif2.15%
Average Position of motif in Targets22.4 +/- 13.0bp
Average Position of motif in Background19.3 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0101.1_REL/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GAGGAAACCC--
--GGAAANCCCC

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGGAAACCC-
GGGGGAATCCCC

MA0107.1_RELA/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAGGAAACCC--
--GGAAATTCCC

MA0081.1_SPIB/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGAAACCC
AGAGGAA----

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAGGAAACCC--
--GGAAATCCCC

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGGAAACCC
NACAGGAAAT--

MA0105.3_NFKB1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGGAAACCC--
-GGGAAATTCCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGGAAACCC---
-GGGAAATCCCCN

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGAAACCC---
-AGGAAACAGCTG

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGAAACCC
NACAGGAAAT--