Information for motif9


Reverse Opposite:

p-value:1e-47
log p-value:-1.097e+02
Information Content per bp:1.453
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif21.27%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets22.4 +/- 9.9bp
Average Position of motif in Background28.9 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----RGCHGBKKGYGSVCGGWNGC
NNNNAGCAGCTGCTGAN-------

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:RGCHGBKKGYGSVCGGWNGC
AACCGGTTNNAACCGGTTTN

MA0500.1_Myog/Jaspar

Match Rank:3
Score:0.47
Offset:0
Orientation:forward strand
Alignment:RGCHGBKKGYGSVCGGWNGC
GACAGCTGCAG---------

MA0472.1_EGR2/Jaspar

Match Rank:4
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:RGCHGBKKGYGSVCGGWNGC
----GTGCGTGGGCGGGNG-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:RGCHGBKKGYGSVCGGWNGC
AACAGATGGC----------

MA0469.1_E2F3/Jaspar

Match Rank:6
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:RGCHGBKKGYGSVCGGWNGC
NNGTGNGGGCGGGAG-----

MA0521.1_Tcf12/Jaspar

Match Rank:7
Score:0.46
Offset:0
Orientation:forward strand
Alignment:RGCHGBKKGYGSVCGGWNGC
AACAGCTGCAG---------

MA0155.1_INSM1/Jaspar

Match Rank:8
Score:0.46
Offset:3
Orientation:forward strand
Alignment:RGCHGBKKGYGSVCGGWNGC
---TGTCAGGGGGCG-----

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:RGCHGBKKGYGSVCGGWNGC
---NNNAAGGGGGCGGGNNN

MA0024.2_E2F1/Jaspar

Match Rank:10
Score:0.46
Offset:5
Orientation:forward strand
Alignment:RGCHGBKKGYGSVCGGWNGC
-----CGGGCGGGAGG----