Information for motif12


Reverse Opposite:

p-value:1e-83
log p-value:-1.928e+02
Information Content per bp:1.673
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets22.7 +/- 11.4bp
Average Position of motif in Background28.3 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCGTCACAGC
----CACAGN

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGTCACAGC------
-CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCGTCACAGC------
-GAGCACAGCAGGACA

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCGTCACAGC------
-CCACACAGCAGGAGA

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGTCACAGC-
NNNTGAGTGACAGCT

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCGTCACAGC
ACGTCA----

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCGTCACAGC-----
TCNCTTTACAGCGNNNT

MA0111.1_Spz1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCGTCACAGC
AGGGTAACAGC

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCGTCACAGC-----
TCNNTTTACAGCGNNNT

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCGTCACAGC------
----CACAGCAGGGGG