Information for motif20


Reverse Opposite:

p-value:1e-26
log p-value:-6.002e+01
Information Content per bp:1.455
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets21.9 +/- 10.4bp
Average Position of motif in Background25.7 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAGAGAGAA--
AAACAGACAAAGGAAT

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAA---
-GAAAGTGAAAGT

MA0508.1_PRDM1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAA-----
AGAAAGTGAAAGTGA

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAA---
-GAAAGTGAAAGT

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAGAA----
TTGACCGAGAATTCC

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAA---
-GAAACTGAAACT

MA0482.1_Gata4/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAGAGAGAA--
-NNGAGATAAGA

MA0035.3_Gata1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGAGAGAGAA---
--ANAGATAAGAA

MA0050.2_IRF1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGAGAGAGAA-------
AAANNGAAAGTGAAAGTAAAN

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAGAGAGAA--
-GGGCGGGAAGG