Information for motif21


Reverse Opposite:

p-value:1e-19
log p-value:-4.407e+01
Information Content per bp:1.665
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets24.1 +/- 11.6bp
Average Position of motif in Background22.4 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCGAAGGASC
NTCAAGGTCA

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCGAAGGASC
-NGAAGC---

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCGAAGGASC
BTCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TCGAAGGASC-
-TCAAGGTCAN

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCGAAGGASC
AGCTCAAGGTCA

MA0109.1_Hltf/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCGAAGGASC
NNATAAGGNN-

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCGAAGGASC-----
TATTCAAGGTCATGCGA

MA0592.1_ESRRA/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCGAAGGASC--
-CCAAGGTCACA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCGAAGGASC
ACWTCAAAGG---

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCGAAGGASC--
AAGTTCAAGGTCAGC