Information for motif4


Reverse Opposite:

p-value:1e-137
log p-value:-3.156e+02
Information Content per bp:1.877
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif7.51%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets23.5 +/- 12.4bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0048.1_NHLH1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCTGCG-
GCGCAGCTGCGT

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTCCGCTGCG
GGCCCCGCCCCC

PB0202.1_Zfp410_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCCGCTGCG----
TCACCCCGCCCCAAATT

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCTGCG
GCTCCG-----

MA0079.3_SP1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCTGCG
GCCCCGCCCCC

PB0110.1_Bcl6b_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCCGCTGCG----
ATCCCCGCCCCTAAAA

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGCTGCG-
NAGCCCCGCCCCCN

MA0516.1_SP2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCTGCG----
GCCCCGCCCCCTCCC

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTCCGCTGCG
CCCCCTGCTGTG

POL001.1_MTE/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTCCGCTGCG-------
NCGACCGCTCCGCTCGAAA