Information for motif1


Reverse Opposite:

p-value:1e-165
log p-value:-3.814e+02
Information Content per bp:1.493
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif15.96%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets25.1 +/- 9.4bp
Average Position of motif in Background28.4 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:1
Score:0.88
Offset:4
Orientation:forward strand
Alignment:KCCHDACATGTHBSRACAKG----
----AACATGCCCAGACATGCCCN

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:2
Score:0.88
Offset:4
Orientation:forward strand
Alignment:KCCHDACATGTHBSRACAKG----
----AACATGCCCAGACATGCCCN

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:3
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:KCCHDACATGTHBSRACAKG----
----NGCATGTCNNGACATGCNNN

MA0106.2_TP53/Jaspar

Match Rank:4
Score:0.85
Offset:5
Orientation:forward strand
Alignment:KCCHDACATGTHBSRACAKG
-----ACATGCCCAGACATG

MA0525.1_TP63/Jaspar

Match Rank:5
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:KCCHDACATGTHBSRACAKG---
---NGGCATGTCTGGGCATGTNN

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:5
Orientation:forward strand
Alignment:KCCHDACATGTHBSRACAKG
-----ACATGCCCGGGCAT-

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:KCCHDACATGTHBSRACAKG----
----AACCGGTTNNAACCGGTTTN

MA0145.2_Tcfcp2l1/Jaspar

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:KCCHDACATGTHBSRACAKG
------CTGGNTNNAACTGG

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KCCHDACATGTHBSRACAKG
ANTNNTACATGTANNTN----

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KCCHDACATGTHBSRACAKG
ANTNTTACATGTATNTA----