Information for motif11


Reverse Opposite:

p-value:1e-36
log p-value:-8.291e+01
Information Content per bp:1.557
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.77%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets20.4 +/- 9.0bp
Average Position of motif in Background31.2 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCTGTCCAT--
--CTGTTCCTGG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTCTGTCCAT-
-ATTTTCCATT

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCTGTCCAT
-GCTGTG---

MA0138.2_REST/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTCTGTCCAT---------
GGCGCTGTCCATGGTGCTGAA

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTCTGTCCAT---
-NCTGTCAATCAN

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCTGTCCAT--
AAGCACCTGTCAATAT

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCTGTCCAT--------
GGAGCTGTCCATGGTGCTGA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCAT-
TGACCTTTGCCCTAN

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCAT---
NNNCAGCTGTCAATATN

MA0504.1_NR2C2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCAT-
TGACCTCTGACCCCN