Information for motif17


Reverse Opposite:

p-value:1e-29
log p-value:-6.875e+01
Information Content per bp:1.580
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.95%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets28.3 +/- 9.7bp
Average Position of motif in Background22.9 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG
------TGGGTGTGGC----

MA0493.1_Klf1/Jaspar

Match Rank:2
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG
------TGGGTGTGGCN---

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:KGRTGATGGGKGTGAGAGNG
-----NTGGGTGTGGCC---

PB0097.1_Zfp281_1/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG
----GGGGGGGGGGGGGGA-

MA0472.1_EGR2/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG--
-------GTGCGTGGGCGGGNG

MA0528.1_ZNF263/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:KGRTGATGGGKGTGAGAGNG-
GGAGGAGGAGGGGGAGGAGGA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:7
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG
--ATGATKGATGRC------

PB0100.1_Zfp740_1/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:KGRTGATGGGKGTGAGAGNG
-NANNTGGGGGGGGNGN---

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-KGRTGATGGGKGTGAGAGNG
RGSMTBCTGGGAAAT------

MA0073.1_RREB1/Jaspar

Match Rank:10
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-KGRTGATGGGKGTGAGAGNG
NGGGGGGGGGTGGTTTGGGG-