Information for motif27


Reverse Opposite:

p-value:1e-16
log p-value:-3.688e+01
Information Content per bp:1.803
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets20.1 +/- 9.3bp
Average Position of motif in Background22.0 +/- 1.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTTGAATGAC---
-NTGATTGACAGN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TTTGAATGAC----
--TGAGTGACAGSC

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTGAATGAC--
TTTGATTGATGN

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTTGAATGAC----
ACTATGAATGAATGAT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTGAATGAC-
CTTGAGTGGCT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTGAATGAC
----CATGAC

MA0067.1_Pax2/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTGAATGAC-
---NCGTGACN

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTGAATGAC---
NTTNTATGAATGTGNNC

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGAATGAC
NNTNTCATGAATGT-

MA0507.1_POU2F2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTTGAATGAC
TTCATTTGCATAT-