Information for motif3


Reverse Opposite:

p-value:1e-66
log p-value:-1.531e+02
Information Content per bp:1.724
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif7.71%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets23.8 +/- 12.0bp
Average Position of motif in Background26.9 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0154.2_EBF1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GTCCCTGGTG--
-TCCCTGGGGAN

MA0138.2_REST/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GTCCCTGGTG-----
GGCGCTGTCCATGGTGCTGAA

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCCCTGGTG-
NGTCCCNNGGGA

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GTCCCTGGTG----
GGAGCTGTCCATGGTGCTGA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTCCCTGGTG
CTGTTCCTGG--

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCCCTGGTG--
CCCCCTGCTGTG

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCCCTGGTG--
TCCCCTGGGGAC

MA0592.1_ESRRA/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTCCCTGGTG
NGTGACCTTGG--

MA0524.1_TFAP2C/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCCCTGGTG-----
TGCCCTGGGGCNANN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTCCCTGGTG
TGACCTTGAN-