Information for motif9


Reverse Opposite:

p-value:1e-39
log p-value:-9.123e+01
Information Content per bp:1.438
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif5.14%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets24.7 +/- 8.2bp
Average Position of motif in Background25.2 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-WWGHKGCAMVGKGCANCTKG
NATGTTGCAA-----------

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:WWGHKGCAMVGKGCANCTKG
-TGGGGCAAAGGTCA-----

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-WWGHKGCAMVGKGCANCTKG
CANAGNNCAAAGTCCA-----

MA0484.1_HNF4G/Jaspar

Match Rank:4
Score:0.48
Offset:0
Orientation:forward strand
Alignment:WWGHKGCAMVGKGCANCTKG
AGAGTCCAAAGTCCA-----

MA0114.2_HNF4A/Jaspar

Match Rank:5
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:WWGHKGCAMVGKGCANCTKG
-NAGNNCAAAGTCCAN----

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.48
Offset:0
Orientation:forward strand
Alignment:WWGHKGCAMVGKGCANCTKG
MTGATGCAAT----------

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:WWGHKGCAMVGKGCANCTKG
ATGATGCAAT----------

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.47
Offset:6
Orientation:forward strand
Alignment:WWGHKGCAMVGKGCANCTKG
------CAAAGGTCAG----

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.47
Offset:1
Orientation:forward strand
Alignment:WWGHKGCAMVGKGCANCTKG
-TAGGGCAAAGGTCA-----

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:10
Score:0.46
Offset:0
Orientation:forward strand
Alignment:WWGHKGCAMVGKGCANCTKG
GTAGGGCAAAGGTCA-----