Information for motif13


Reverse Opposite:

p-value:1e-63
log p-value:-1.460e+02
Information Content per bp:1.733
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets22.3 +/- 11.6bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0048.1_NHLH1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCGCAGCTGC--
GCGCAGCTGCGT

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GCGCAGCTGC----
NNNNAGCAGCTGCTGAN

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GCGCAGCTGC--
--NCAGCTGCTG

MA0500.1_Myog/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCGCAGCTGC-
NNGCAGCTGTC

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCGCAGCTGC---
-AGCAGCTGCTNN

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCGCAGCTGC
NNACAGCTGC

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCGCAGCTGC----
-TGCAGCTGTCCCT

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCGCAGCTGC-
NNGCAGCTGTT

MA0522.1_Tcf3/Jaspar

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCGCAGCTGC--
-CACAGCTGCAG

MA0506.1_NRF1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCGCAGCTGC
TGCGCAGGCGC