Information for motif15


Reverse Opposite:

p-value:1e-54
log p-value:-1.256e+02
Information Content per bp:1.514
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets23.5 +/- 9.6bp
Average Position of motif in Background25.4 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0107.1_RELA/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGAATTTCC-----------

MA0105.3_NFKB1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGAATTTCCC----------

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGAATTTCC-----------

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:RGMATTTCTVRKMTYTGCGB---
---RTTKCADNNKRTTGCATNAN

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGGATTTCC-----------

MA0101.1_REL/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGGATTTCC-----------

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--RGMATTTCTVRKMTYTGCGB
NGGGGATTTCCC----------

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:RGMATTTCTVRKMTYTGCGB
-GCATTCCAGN---------

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:RGMATTTCTVRKMTYTGCGB
-RCATTCCWGG---------

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:10
Score:0.45
Offset:-1
Orientation:reverse strand
Alignment:-RGMATTTCTVRKMTYTGCGB
GGGGATTCCCCC---------