Information for motif2


Reverse Opposite:

p-value:1e-207
log p-value:-4.783e+02
Information Content per bp:1.776
Number of Target Sequences with motif167.0
Percentage of Target Sequences with motif6.86%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets23.0 +/- 12.8bp
Average Position of motif in Background26.2 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----CCRGGCAWGT
ATGCCCGGGCATGT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CCRGGCAWGT--
-AAGGCAAGTGT

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCRGGCAWGT--
CAAATCCAGACATCACA

MA0106.2_TP53/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CCRGGCAWGT
ACATGCCCAGACATG-

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:5
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------CCRGGCAWGT---
AACATGCCCAGACATGCCCN

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:6
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------CCRGGCAWGT---
AACATGCCCAGACATGCCCN

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCRGGCAWGT
CCWGGAATGY

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCRGGCAWGT
CCAGACAG--

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCRGGCAWGT
BCAGACWA--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCRGGCAWGT
CCAGACRSVB