Information for motif5


Reverse Opposite:

p-value:1e-125
log p-value:-2.879e+02
Information Content per bp:1.694
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif3.95%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets26.2 +/- 12.6bp
Average Position of motif in Background26.3 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0138.2_REST/Jaspar

Match Rank:1
Score:0.66
Offset:-11
Orientation:forward strand
Alignment:-----------GGACAGCGCC
TTCAGCACCATGGACAGCGCC

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.65
Offset:-10
Orientation:reverse strand
Alignment:----------GGACAGCGCC
TCAGCACCATGGACAGCTCC

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGACAGCGCC
-CACAGN---

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGACAGCGCC
--AGCGCGCC

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGACAGCGCC
GGGGGCGGGGCC

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCGCC---
AGGTCANTGACCTN

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGACAGCGCC--
GATATTGACAGCTGCGT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCGCC
AGGTCA-----

MA0597.1_THAP1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGACAGCGCC
TNNGGGCAG----

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGACAGCGCC
---CAGCC--