Information for motif13


Reverse Opposite:

p-value:1e-13
log p-value:-3.025e+01
Information Content per bp:1.623
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif8.75%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets28.4 +/- 13.0bp
Average Position of motif in Background23.4 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCTGAAGGAA--
TGCCCTGGGGCNANN

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCTGAAGGAA
--NGAAGC--

MA0028.1_ELK1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCTGAAGGAA
GAGCCGGAAG---

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTGAAGGAA--------
NNCCTGNAAAAAAAAAAAAA

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTGAAGGAA--------
NNCCTGNAAAAAAAAAAAAA

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTGAAGGAA-
SCCTSAGGSCAW

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTGAAGGAA-
CACAGCAGGGGG

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTGAAGGAA
ACCGGAAG---

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTGAAGGAA
ANCCGGAAGT--

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCTGAAGGAA-
CCACACAGCAGGAGA