Information for motif3


Reverse Opposite:

p-value:1e-45
log p-value:-1.038e+02
Information Content per bp:1.563
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif15.15%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets24.7 +/- 13.6bp
Average Position of motif in Background17.1 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GRAWGATATC--
-AAGGATATNTN

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GRAWGATATC------
NNNCTGATATCTCNNNN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GRAWGATATC--
NGATGACGTCAT

MA0492.1_JUND_(var.2)/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GRAWGATATC---
AAAGATGATGTCATC

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GRAWGATATC-----
TNNNATGATTTCNNCNN

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GRAWGATATC--
NGATGACGTCAT

PB0125.1_Gata3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GRAWGATATC-------
NNNNNCGATANNATCTNNNNAN

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GRAWGATATC
NACAGGAAAT-

MA0156.1_FEV/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GRAWGATATC
-CAGGAAAT-

MA0488.1_JUN/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GRAWGATATC-----
--ATGACATCATCNN