Information for motif6


Reverse Opposite:

p-value:1e-27
log p-value:-6.335e+01
Information Content per bp:1.474
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif10.77%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets24.7 +/- 8.7bp
Average Position of motif in Background29.4 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR
--ATAACCACTTGAAAATT-

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:2
Score:0.46
Offset:8
Orientation:reverse strand
Alignment:CWCTYGCMASTKGMRAGWGR
--------AATGGAAAAT--

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.46
Offset:9
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR
---------AAGGCAAGTGT

MA0508.1_PRDM1/Jaspar

Match Rank:4
Score:0.46
Offset:5
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR
-----AGAAAGTGAAAGTGA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.45
Offset:12
Orientation:reverse strand
Alignment:CWCTYGCMASTKGMRAGWGR--
------------TTGAGTGSTT

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.44
Offset:8
Orientation:reverse strand
Alignment:CWCTYGCMASTKGMRAGWGR----
--------AATTTCAAGTGGCTTN

MA0523.1_TCF7L2/Jaspar

Match Rank:7
Score:0.44
Offset:6
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR
------AAAGATCAAAGGAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.44
Offset:12
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR-
------------TTAAGTGGA

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.44
Offset:12
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR----
------------GAAAGTGAAAGT

MA0051.1_IRF2/Jaspar

Match Rank:10
Score:0.43
Offset:11
Orientation:forward strand
Alignment:CWCTYGCMASTKGMRAGWGR---------
-----------GGAAAGCGAAACCAAAAC