Information for motif8


Reverse Opposite:

p-value:1e-26
log p-value:-6.045e+01
Information Content per bp:1.384
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif10.44%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets27.7 +/- 11.1bp
Average Position of motif in Background36.7 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCACTGTGTC
--GCTGTG--

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCACTGTGTC--
NNNCCATTGTGTNAN

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCACTGTGTC
---CTTTGT-

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACTGTGTC
CTCATTGTC--

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCACTGTGTC
CCTTTGTT--

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCACTGTGTC-
NNTCCTGCTGTGNNN

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACTGTGTC
CCATTGTTTT

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCACTGTGTC-
GTAGGTCACTGGGTCA

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCACTGTGTC--
-GTCTGTGGTTT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCACTGTGTC---
---CTGTTCCTGG