Information for motif9


Reverse Opposite:

p-value:1e-24
log p-value:-5.676e+01
Information Content per bp:1.572
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif12.79%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets22.4 +/- 11.9bp
Average Position of motif in Background29.7 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTGTCTCCCA---
-TGTCTGDCACCT

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTGTCTCCCA---
CTGTCTGTCACCT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTGTCTCCCA
TWGTCTGV--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTGTCTCCCA--
--HTTTCCCASG

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTCCCA----
TACGAGACTCCTCTAAC

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TTGTCTCCCA
NNNCCATTGTGTNAN-

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTCCCA
CCATTGTTTT---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGTCTCCCA
CTGTCTGG--

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGTCTCCCA--
NNNNTTGTGTGCTTNN

MA0482.1_Gata4/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTGTCTCCCA
TCTTATCTCCC-