Information for motif10


Reverse Opposite:

p-value:1e-28
log p-value:-6.521e+01
Information Content per bp:1.505
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets23.2 +/- 6.9bp
Average Position of motif in Background22.3 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TKTDAAAVACATYHWYHAWA
TTTGAAACCG----------

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TKTDAAAVACATYHWYHAWA
NAATTTTACGAGNTNN------

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TKTDAAAVACATYHWYHAWA
NNGTTTTACGACTTTA------

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TKTDAAAVACATYHWYHAWA
NNNTTTTACGACNTTN------

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TKTDAAAVACATYHWYHAWA
NNAATTAATGACCNNN------

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TKTDAAAVACATYHWYHAWA
ANNTTTTACGACNTNN------

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---TKTDAAAVACATYHWYHAWA
NNNTTTNTAATACNG--------

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:TKTDAAAVACATYHWYHAWA
-NTTNAGAACAATTA-----

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---TKTDAAAVACATYHWYHAWA
ANNATTTTACGACNTNA------

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.47
Offset:2
Orientation:forward strand
Alignment:TKTDAAAVACATYHWYHAWA
--TTAAGAACAATAAATT--