Information for motif18


Reverse Opposite:

p-value:1e-13
log p-value:-3.216e+01
Information Content per bp:1.743
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets25.0 +/- 13.3bp
Average Position of motif in Background15.8 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--YATTCAAAAT
CGGTTTCAAA--

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----YATTCAAAAT--
AATCAATTCAATAATT

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YATTCAAAAT---
ACATTCATGACACG

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----YATTCAAAAT--
GACCACATTCATACAAT

MA0507.1_POU2F2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-YATTCAAAAT--
ATATGCAAATNNN

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YATTCAAAAT
TTATGCAAAT-

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YATTCAAAAT
ATATGCAAAT-

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---YATTCAAAAT---
TTGTATGCAAATTAGA

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------YATTCAAAAT
NNCATTCATTCATNNN

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--YATTCAAAAT---
CAATTGCAAAAATAT