Information for motif2


Reverse Opposite:

p-value:1e-81
log p-value:-1.871e+02
Information Content per bp:1.707
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif6.75%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets24.5 +/- 12.9bp
Average Position of motif in Background16.8 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTAAGACACG
-BCAGACWA-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTAAGACACG
-CCAGACAG-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTAAGACACG-
-CCAGACRSVB

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTAAGACACG---
CAAATCCAGACATCACA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTAAGACACG---
--AAGGCAAGTGT

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTAAGACACG-
---AGTCACGC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CTAAGACACG--
------CACGCA

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTAAGACACG--
----GHCACGTG

MA0591.1_Bach1::Mafk/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTAAGACACG--
NTGCTGAGTCATCCN

MA0029.1_Mecom/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTAAGACACG------
--AAGATAAGATAACA