Information for motif22


Reverse Opposite:

p-value:1e-11
log p-value:-2.615e+01
Information Content per bp:1.583
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets27.7 +/- 8.6bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ARGGGTCAGCCTCAGGCTCC
-----NTNGCCTCAGGCNNN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:2
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ARGGGTCAGCCTCAGGCTCC
-----WTGSCCTSAGGS---

MA0524.1_TFAP2C/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ARGGGTCAGCCTCAGGCTCC
----CATGGCCCCAGGGCA-

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:ARGGGTCAGCCTCAGGCTCC
-----ANTGCCTGAGGCAAN

MA0003.2_TFAP2A/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ARGGGTCAGCCTCAGGCTCC
----CATTGCCTCAGGGCA-

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:ARGGGTCAGCCTCAGGCTCC
--------GCCTCAGGGCAT

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----ARGGGTCAGCCTCAGGCTCC
GGCGAGGGGTCAAGGGC-------

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.49
Offset:8
Orientation:forward strand
Alignment:ARGGGTCAGCCTCAGGCTCC
--------GKVTCADRTTWC

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:9
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:ARGGGTCAGCCTCAGGCTCC
-----NTCGCCTCAGGCAAT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----ARGGGTCAGCCTCAGGCTCC
CGCGCCGGGTCACGTA--------