Information for motif24


Reverse Opposite:

p-value:1e-9
log p-value:-2.138e+01
Information Content per bp:1.749
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets27.4 +/- 13.8bp
Average Position of motif in Background24.9 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGATCCGGG-----
NNNNATGCGGGTNNNN

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCGATCCGGG-
-ACATCCTGNT

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCGATCCGGG
--GCTCCG--

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCGATCCGGG--
--CTTCCNGGAA

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCGATCCGGG---
----TNNGGGCAG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGATCCGGG-------
-CGCGCCGGGTCACGTA

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCGATCCGGG
NRYTTCCGGY

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCGATCCGGG----
RGSMTBCTGGGAAAT

MA0028.1_ELK1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCGATCCGGG--
--CTTCCGGNNN

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCGATCCGGG-----
GTACATCCGGATTTTT