Information for motif5


Reverse Opposite:

p-value:1e-39
log p-value:-9.077e+01
Information Content per bp:1.521
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets24.4 +/- 9.0bp
Average Position of motif in Background23.4 +/- 4.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCAWBYASMTAHWWTYWAAA
TAAGCCACTTAACATT----

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.46
Offset:0
Orientation:forward strand
Alignment:GCAWBYASMTAHWWTYWAAA
TAAGCCACTTGAATTT----

GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:GCAWBYASMTAHWWTYWAAA---
---NDBAGATRWTATCTVNNNNN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.45
Offset:1
Orientation:forward strand
Alignment:GCAWBYASMTAHWWTYWAAA
-AAACCACANN---------

PH0061.1_Hoxb6/Jaspar

Match Rank:5
Score:0.45
Offset:-3
Orientation:reverse strand
Alignment:---GCAWBYASMTAHWWTYWAAA
NNNGTAATTACNNATA-------

MA0479.1_FOXH1/Jaspar

Match Rank:6
Score:0.45
Offset:-2
Orientation:forward strand
Alignment:--GCAWBYASMTAHWWTYWAAA
TCCAATCCACA-----------

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.44
Offset:0
Orientation:forward strand
Alignment:GCAWBYASMTAHWWTYWAAA
TAAGCCACTTGAAATT----

PH0053.1_Hoxa6/Jaspar

Match Rank:8
Score:0.44
Offset:-3
Orientation:forward strand
Alignment:---GCAWBYASMTAHWWTYWAAA
AAGGTAATTACCTAAT-------

MA0125.1_Nobox/Jaspar

Match Rank:9
Score:0.44
Offset:-1
Orientation:reverse strand
Alignment:-GCAWBYASMTAHWWTYWAAA
ACCAATTA-------------

PH0045.1_Hoxa1/Jaspar

Match Rank:10
Score:0.44
Offset:-3
Orientation:reverse strand
Alignment:---GCAWBYASMTAHWWTYWAAA
ACGGTAATTAGCTCAG-------